Kathleen Hall, Ph. D.

Mattia Bernetti, Kathleen B. Hall, & Giovanni Bussi (2021). “Reweighting of molecular simulations with explicit-solvent SAXS restraints elucidates ion-dependent RNA ensembles” Nucleic Acids Res. 2021 Jun 9;gkab459. doi: 10.1093/nar/gkab459. Online ahead of print. (Abstract)

Jasmine Cubuk, Jhullian J. Alston, J. Jeremías Incicco, Sukrit Singh, Melissa D. Stuchell-Brereton, Michael D. Ward, Maxwell I. Zimmerman, Neha Vithani, Daniel Griffith, Jason A. Wagoner, Gregory R. Bowman, Kathleen B. Hall, Andrea Soranno, & Alex S. Holehouse. (2021). “The SARS-CoV-2 nucleocapsid protein is dynamic, disordered, and phase separates with RNA” Nat Commun. 2021 Mar 29;12(1):1936. doi: 10.1038/s41467-021-21953-3. (Abstract)

Welty R., Rau M., Pabit S., Dunstan M.S., Conn G.L., Pollack L., & Hall K.B. (2019). “Ribosomal Protein L11 Selectively Stabilizes a Tertiary Structure of the GTPase Center rRNA Domain.” J Mol Biol. 2019 Dec 24. pii: S0022-2836(19)30710-7. doi: 10.1016/j.jmb.2019.12.010. [Epub ahead of print] (Abstract)

Dyson H.J., Hall K.B., & Piston D.W. (2019). “Economics and Politics of Publishing in Our Mission-Driven Society.” Biophys J. 2019 May 21;116(10):E1-E2. doi: 10.1016/j.bpj.2019.04.019. Epub 2019 May 1. (Abstract)

Welty R., Pabit S.A., Katz A.M., Calvey G.D., Pollack L., & Hall K.B. (2018). “Divalent ions tune the kinetics of a bacterial GTPase Center rRNA folding transition from secondary to tertiary structure.” RNA. 2018 Dec;24(12):1828-1838. doi: 10.1261/rna.068361.118. Epub 2018 Sep 25. (Abstract)

Weber G., DeKoster G.T., Holton N., Hall K.B., & Wahl M.C. (2018). “Molecular principles underlying dual RNA specificity in the Drosophila SNF protein.” Nat Commun. 2018 Jun 7;9(1):2220. doi: 10.1038/s41467-018-04561-6. (Abstract)

Hayatshahi H.S., Roe D.R., Galindo-Murillo R., Hall K.B., & Cheatham T.E. 3rd (2017). “Computational Assessment of Potassium and Magnesium Ion Binding to a Buried Pocket in the GTPase-Associating Center RNA.” J Phys Chem B. 2017 Jan 26;121(3):451-462. doi: 10.1021/acs.jpcb.6b08764. Epub 2017 Jan 17. (Abstract)

Welty R. & Hall K.B. (2016). “Nucleobases Undergo Dynamic Rearrangements during RNA Tertiary Folding.” J Mol Biol. 2016 Nov 6;428(22):4490-4502. doi: 10.1016/j.jmb.2016.09.015. Epub 2016 Sep 29. (Abstract)

Bergonzo C., Hall K.B, & Cheatham T.E. (2016). “Divalent Ion Dependent Conformational Changes in an RNA Stem-Loop Observed by Molecular Dynamics.” J Chem Theory Comput. 2016 Jul 12;12(7):3382-9. doi: 10.1021/acs.jctc.6b00173. Epub 2016 Jun 28. (Abstract)

Bergonzo C., Hall K.B., & Cheatham T.E. 3rd. (2015). “Stem-Loop V of Varkud Satellite RNA Exhibits Characteristics of the Mg(2+) Bound Structure in the Presence of Monovalent Ions.” J Phys Chem B. 2015 Sep 24;119(38):12355-64. doi: 10.1021/acs.jpcb.5b05190. Epub 2015 Sep 14. (Abstract)

Rau M.J., Welty R., Stump T.W., & Hall K.B. (2015). “Formation of Tertiary Interactions during rRNA GTPase Center Folding.” J Mol Biol. 2015 Aug 28;427(17):2799-815. doi: 10.1016/j.jmb.2015.07.013. Epub 2015 Jul 22. (Abstract)

Hall K.B. (2015). “Mighty tiny.” RNA. 2015 Apr;21(4):630-1. doi: 10.1261/rna.050567.115. (Abstract)

Melnykov A.V., Nayak R.K., Hall K.B., & Van Orden A. (2015). “Effect of loop composition on the stability and folding kinetics of RNA hairpins with large loops.” Biochemistry. 2015 Mar 17;54(10):1886-96. doi: 10.1021/bi5014276. Epub 2015 Mar 4. (Abstract)

Rau M.J. & Hall K.B. (2015). “2-Aminopurine Fluorescence as a Probe of Local RNA Structure and Dynamics and Global Folding.” Methods Enzymol. 2015;558:99-124. doi: 10.1016/bs.mie.2015.01.006. Epub 2015 Mar 3. (Abstract)

DeKoster G.T., Delaney K.J., & Hall K.B. (2014). “A compare-and-contrast NMR dynamics study of two related RRMs: U1A and SNF.” Biophys J. 2014 Jul 1;107(1):208-19. doi: 10.1016/j.bpj.2014.05.026. (Abstract)