Accurately modeling nanosecond protein dynamics requires at least microseconds of simulation.
Bowman, G.R.
Accurately modeling nanosecond protein dynamics requires at least microseconds of simulation.
J Comput Chem 37:558-566 (2016) (Abstract)
Category: All Publications
Collective matrix remodeling by isolated cells: unionizing home improvement do-it-yourselfers.
Rowe R.A., Pryse K.M., Asnes C.F., Elson E.L., & Genin G.M. (2015). “Collective matrix remodeling by isolated cells: unionizing home improvement do-it-yourselfers.” Biophys J. 2015 Jun 2;108(11):2611-2. doi: 10.1016/j.bpj.2015.04.026. (Abstract)
14-3-3 proteins restrain the Exo1 nuclease to prevent overresection.
Chen X., Kim I.K., Honaker Y., Paudval S.C., Koh W.K., Sparks M., Lis S., Piwnica-Worms H., Ellenberger T., & You Z. (2015). “14-3-3 proteins restrain the Exo1 nuclease to prevent overresection. J Biol Chem. 2015 May 8;290(19):12300-12. doi: 10.1074/jbc.M115.644005. Epub 2015 Apr 1. (Abstract)
The rise and fall of poly(ADP-ribose): An enzymatic perspective.
Pascal J.M., & Ellenberger T. (2015). “The rise and fall of poly(ADP-ribose): An enzymatic perspective. DNA Repair (Amst). 2015 Aug;32:10-6. doi: 10.1016/j.dnarep.2015.04.008. Epub 2015 May 1. (Abstract)
Structure-based discovery of small molecule hepsin and HGFA protease inhibitors: Evaluation of potency and selectivity derived from distinct binding pockets.
Franco F.M., Jones D.E., Harris P.K., Han Z., Wildman S.A., Jarvis C.M., & Janetka J.W. (2015). “Structure-based discovery of small molecule hepsin and HGFA protease inhibitors: Evaluation of potency and selectivity derived from distinct binding pockets.” Bioorg Med Chem. 2015 May 15;23(10):2328-43. doi: 10.1016/j.bmc.2015.03.072. Epub 2015 Apr 4. (Abstract)
The wrapping loop and Rap1 C-terminal (RCT) domain of yeast Rap1 modulate access to different DNA binding modes.
Feldmann, E.A., De Bona, P. and Galletto, R.
The wrapping loop and Rap1 C-terminal (RCT) domain of yeast Rap1 modulate access to different DNA binding modes.
Journal of Biological Chemistry 290:11455-11466 (2015). (Abstract)
Yet another job for Dna2: Checkpoint activation.
Wanrooij, P.H. and Burgers, P.M.
Yet another job for Dna2: Checkpoint activation.
DNA Repair 43:4179-4190 (2015). (Abstract)
Regulation of yeast DNA polymerase δ-mediated strand displacement synthesis by 5′-flaps.
Koc, K.N., Stodola, J.L, Burgers, P.M. and Galletto, R.
Regulation of yeast DNA polymerase δ-mediated strand displacement synthesis by 5′-flaps.
Nucleic Acid Research 43:4179-4190. (2015). (Abstract)
Active displacement of RecA filaments by UvrD translocase activity.
Petrova V., Chen S.H., Molzberger E.T., Tomko E., Chitteni-Pattu S., Jia H., Ordabayev Y., Lohman T.M., & Cox M.M. (2015). “Active displacement of RecA filaments by UvrD translocase activity.” Nucleic Acids Res. 2015 Apr 30;43(8):4133-49. doi: 10.1093/nar/gkv186. Epub 2015 Mar 30. (Abstract)
Mighty tiny.
Hall K.B. (2015). “Mighty tiny.” RNA. 2015 Apr;21(4):630-1. doi: 10.1261/rna.050567.115. (Abstract)